Update I have a fault with the Y axis only going in one direction when jogging both left and right arrows.
I have fault tested all the wires, motors and different setups and pinpointed it to the breakout board itself.
initially I presumed it was my wiring so swapped the green connector plugs on X axis and Y axis and the result was X would only go in one direction and Y became crippled in movement. at this point I got confused and fault tested everything finding the motors, wires and drivers all worked perfectly when not wired to the Y axis pins on the breakout board.
I tried different settings on Y axis as well in mach3 thinking it could be a settings issue but no luck however I am no expert on mach3.
Does anyone recognise this issue or have any suggestions or is it possibly there is a physical fault with the pins on the breakout board?