The LED's being on isn't an issue it just means you need to change the Active Hi/Lo for each switch. However, the fact it doesn't go off when you operate the switch shows something is wrong.

What type of switches did you fit and what polarity ie: NO (Normally open) or NC(normally closed). If the LED's didn't change when you changed the switch state then I would suspect your BOB hack isn't working or the wiring is wrong.